molprobity

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dreamlessx / Protein_Ideal

Full BM5.5 (257 complexes) protein-protein complex relaxation benchmark. AlphaFold 2.3.2 + Boltz-1 v0.4.1 with AMBER relaxation on all models, Rosetta 3.15 relaxation (6 protocols x 5 replicates).

benchmarking structural-biology protein-structure computational-biology relaxation rosetta protein-protein-docking alphafold boltz molprobity

Updated May 4, 2026
Shell

dreamlessx / Protein_Data_Analysis

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Systematic validation of AlphaFold2 and Boltz1 protein structure predictions against crystallographic references using wwPDB-standard MolProbity metrics. 6,820 structures from 20 PDB complexes.

bioinformatics validation structural-biology protein-structure rosetta alphafold alphafold2 molprobity boltz1

Updated May 4, 2026
Python

pranavathiyani / ramacomp

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RamaComp: Compare Ramachandran (φ/ψ) plots across multiple protein structures, side by side, in the browser

pdb protein-structure ramachandran-plot structure-comparison alphafold visualization-tool molprobity structure-validation

Updated Jun 14, 2026
HTML

karanrajbhar2003 / Protein_structure_prediction

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ProSutra is an automated pipeline for protein structure prediction, validation, and report generation with CLI, Streamlit, and Electron interfaces.

bioinformatics protein-structure computational-biology bioinformatics-pipeline bioinformatics-analysis dssp modeller protein-structure-prediction bioinformatics-tool freesasa computational-biology-datasets protein-validation molprobity robetta qmean voromqa

Updated Mar 19, 2026
Python

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