mpra

Oligopool Calculator - Automated design and analysis of oligo pool libraries

A R package to analyze data from different massively parallel reporter assays

Library to analyse, filter and plot MPRA count data.

An in vivo PRA reveals intronic motifs that combinatorially regulate splicing in a tissue-biased manner.

From Nucleotide Transformer embeddings to single-nucleotide genome annotation.

MPRAscore: Robust and non-parametric analysis of massively parallel reporter assays (MPRA)

Allelic differential expression analysis for massively parallel reporter assay data

Methodological investigation of calibration-statistic mismatch in deep learning regulatory variant prediction. Quantifies the saturation effect when published single-track quantile calibration is composed with max-over-tracks aggregation, and demonstrates the matched-calibration fix on AlphaGenome with Tewhey 2016 MPRA data.

A repository for building standardized objects for MPRAbase.

eBM: Enhanced BRAIN-MAGNET convolutional neural network modeling non-coding regulatory elements enhancer activity in human neural stem cells

ARVID-Skin

AEMVARS

a program to predict transcription factor binding sites from single-nucleotide deletion MPRAs

Atlas of Regulatory Variants in Disease (ARVID) home page.

ARVID-Neuropsychiatry

ARVID-Cancers