openmicroscopy

Here are 22 public repositories matching this topic...

hms-dbmi / viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

imaging ome-tiff openmicroscopy zarr viv hubmap hidivelab

Updated Sep 1, 2026
JavaScript

ome / omero-server-docker

Star

OMERO.server production docker image

docker omero ome openmicroscopy omero-server

Updated Aug 5, 2026
Shell

manics / kubernetes-omero

Star

Kubernetes Helm charts for OMERO

kubernetes helm data-management omero openscience ome image-management openmicroscopy helm-chart kubernetes-helm-charts

Updated Aug 4, 2026
Python

ome / omero-web-docker

Star

OMERO.web production docker image

docker omero ome openmicroscopy omero-web

Updated Aug 3, 2026
Makefile

ome / vsftpd-anonymous-upload-docker

Star

Vsftpd Docker image for anonymous FTP uploads only

docker kubernetes ftp vsftpd helm-charts idr ome openmicroscopy anonymous-ftp

Updated Oct 26, 2022
Shell

ome / ansible-role-postgresql-backup

Star

Backup PostgreSQL database servers

ansible backup database ansible-role postgresql ome openmicroscopy

Updated Nov 6, 2025
Python

ome / ansible-role-iptables-raw

Star

Ansible module to import iptables_raw library

ansible firewall ansible-role iptables ome openmicroscopy

Updated Oct 31, 2025
Python

ome / ansible-role-minio-s3-gateway

Star

Minio S3 gateway with additional restricted users

ansible-role minio ome openmicroscopy s3-gateway

Updated Apr 23, 2024
Python

ome / ansible-role-omero-web

Star

Installs and configures OMERO.web and Nginx

ansible omero ome openmicroscopy

Updated Jul 20, 2026
Python

sorgerlab / omero.cloudarchive-cloudformation

Star

OMERO Cloudarchive Cloudformation

aws cloudformation omero openmicroscopy

Updated Jan 2, 2018
Shell

ome / ansible-role-omero-common

Star

Common variables and tasks for OME applications

ansible omero ome openmicroscopy

Updated Nov 3, 2025
Python

microscopepony / omero-mapr-graphql

Star

Query OMERO.mapr IDR metadata using GraphQL

graphql omero openmicroscopy mapr

Updated Jan 17, 2021
Python

IDR / k8s-analysis-deploy

Star

Continuous deployment for the IDR Kubernetes analysis platform

deployment opendata jupyterhub idr ome openmicroscopy

Updated Jan 29, 2020
Shell

ome / fluentd-docker

Star

Fluentd image with additional plugins

docker logging fluentd ome openmicroscopy

Updated Jan 11, 2018

ome / ansible-role-omego

Star

omego, a utility for downloading and installing OME applications

ansible omero ome openmicroscopy omego

Updated Feb 1, 2021
HTML

microscopepony / omero-oauth

Star

OMERO.web application to allow OAuth2 login to OMERO

oauth2 omero ome openmicroscopy omero-web omero-web-app

Updated Nov 10, 2020
Python

German-BioImaging / oztest

Star

WIP: Conformance test cases and tools for OME-Zarr

test openmicroscopy ngff ome-zarr

Updated Sep 2, 2026
Python

ome / presentation-20171110-gre-symposium

Star

Presentation given at the University of Dundee School of Life Sciences GRE Symposium 2017

presentation slides reveal-js gre idr ome openmicroscopy reveal-md image-data-repository university-of-dundee

Updated Nov 13, 2017
Jupyter Notebook

sorgerlab / omero.cloudarchive-docker

Star

OMERO Cloudarchive Docker

docker aws cloud s3 omero openmicroscopy

Updated Oct 18, 2017
Python

ome / idr-redmine-tracker

Star

Email tracker for IDR submissions using redmine

docker kubernetes redmine idr ome openmicroscopy email-tracker

Updated Jan 11, 2022
Dockerfile

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