outbreaks

Report templates and helper functions for applied epidemiology

RECON learn: a free, open platform for training material on epidemics analysis

During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.

Course on nowcasting and forecasting of infectious disease dynamics

Tools And ggplot Extensions For Infectious Disease Surveillance And Outbreak Investigation

R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic

An R package for simulating line lists

R package for handling linelist data

Understanding, evaluating, and improving forecasts of infectious disease burden

ISARIC VERTEX is a web-based application designed to present graphs and tables based on relevant research questions that need to be quickly answered during an outbreak. It serves as an analysis tool for data captured through our complementary tools: ISARIC ARC and ISARIC BRIDGE.

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

ISARIC ARC is a comprehensive machine-readable document that contains a library of questions to be used in Case Report Forms (CRFs) during disease outbreaks.

Open an issue in this repository if you have general questions about RECON packages

Bayesian SEIR model fitting to multiple facility outbreaks

This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics

Docker-based COHESIVE Information System (CIS) for One Health surveillance, outbreak investigation, and risk assessment of zoonoses.

Latest outbreaks & news releases from CDC.gov

BRIDGE is a web-based application designed to operationalize ARC and tailor ISARIC CRFs to disease outbreaks.

O ÆSOP (Alert-Early System of Outbreaks with Pandemic Potential) é um sistema que integra múltiplas fontes de dados para ajudar autoridades de saúde a identificar antecipadamente possíveis surtos, permitindo ações preventivas antes que a transmissão se intensifique.