phage-genomics

Structure-aware functional annotation of phage genomes.

Running phispy, but on the web

Python based gene alignements visualisation tool

Bacteriophage discovery & characterization pipeline (Nextflow DSL2) — FastQC, Kraken2, SPAdes, VirSorter2, CheckV, BACPHLIP, Phrokka, Prokka, vContact2, vHULK, BLAST

Phage-focused genome annotation and comparative genomics workflow integrating structural gene prediction, evidence-supported functional annotation, and INPHARED nearest-phage analysis.

End-to-end bacteriophage genome characterisation and phage-therapy screening — a one-click macOS app.

CLI toolkit for building distance-based proteomic virus phylogenies from protein or nucleotide inputs.

Staphylococcus aureus bakteriyofaj izolatlarinin assembly ve karakterizasyon ciktilari (metaviralSPAdes, CheckV, BACPHLIP, vContact2)

A professional portfolio featuring academic projects, lab work, research papers, presentations, and selected leadership experience. This site provides a broader view of my research interests, technical skills, scientific writing, and ongoing professional development.