Here are
11 public repositories
matching this topic...
Allele-specific copy number estimation with whole genome sequencing
The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow
Updated
Dec 4, 2025
Python
Roddy RNA-seq Workflow Plugin
Updated
Jun 12, 2024
Perl
The Roddy workflow development and management system.
Updated
Jul 28, 2026
Groovy
The DKFZ alignment workflow plugin originally developed at the eilslabs
Updated
Jul 8, 2026
Python
A Platypus-based workflow for indel calling
Updated
Jul 29, 2024
Python
A library to access different kinds of cluster backends
Updated
Jul 14, 2026
Groovy
A basic Roddy plugin for computational oncology workflows
Updated
Jul 13, 2026
Groovy
This Roddy plugin contains a basic bam to fastq workflow using Picard and Samtools.
Updated
Nov 18, 2020
Shell
Roddy Base Plugin (used in all plugins)
Updated
Jul 25, 2018
Java
Roddies Default Plugin (Base for all Roddy plugins)
Updated
Jun 18, 2024
Shell
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