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Is Swarm v3 suitable for long pacbio reads ?

Status: Open.

#192 In torognes/swarm;

· zhangjl-work opened on Aug 27, 2026

Native support for gz and bz2 files

enhancement

Status: Open.

#188 In torognes/swarm;

· fgvieira opened on Apr 15, 2026

Option to exclude seeds or clusters with low abundance

enhancement

Status: Open.

#176 In torognes/swarm;

· torognes opened on Jun 14, 2023

Develop a swarm-plugin for Qiime 2

enhancement

Status: Open.

#89 In torognes/swarm;

· frederic-mahe opened on Oct 17, 2016

·  

swarm 4.0

Adapt to AVX2

enhancement

Status: Open.

#12 In torognes/swarm;

· torognes opened on Feb 19, 2013

·  

swarm 4.0