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UC San Diego Center for Computational Biology & Bioinformatics

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  1. visJS2jupyter visJS2jupyter Public

    visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    Jupyter Notebook 78 16

  2. VAPr VAPr Public archive

    VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

    Python 36 3

  3. NetColoc NetColoc Public

    development of network co-localization tool

    Jupyter Notebook 18 8

  4. C-VIEW C-VIEW Public

    This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

    Python 11 2

  5. cirrus-ngs cirrus-ngs Public

    Python 8 3

  6. gsia gsia Public archive

    Gene Set Information Analysis

    R 7 1

Repositories

Showing 10 of 24 repositories
  • NetColoc Public

    development of network co-localization tool

    ucsd-ccbb/NetColoc's past year of commit activity
    Jupyter Notebook 18 MIT 8 2 0 Updated Sep 9, 2026
  • SLC22_TCGA_Methods Public archive

    Whisenant/Nigam TCGA/SLC22 Analysis

    ucsd-ccbb/SLC22_TCGA_Methods's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 23, 2025
  • VK2-vaginal-epithelial-cell-RNA-seq-analysis Public archive
    ucsd-ccbb/VK2-vaginal-epithelial-cell-RNA-seq-analysis's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 23, 2025
  • ASD_combined_network_analysis Public

    Notebooks from ASD-CHD combined network analysis paper

    ucsd-ccbb/ASD_combined_network_analysis's past year of commit activity
    Jupyter Notebook 2 MIT 1 1 0 Updated Jun 20, 2024
  • Friedman_WGS Public
    ucsd-ccbb/Friedman_WGS's past year of commit activity
    Shell 0 0 0 0 Updated Jun 10, 2024
  • MitoProteomicsMethods Public archive

    Mitochondrial Proteomic Analysis for Yu/Pekkurnaz Project

    ucsd-ccbb/MitoProteomicsMethods's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 3, 2024
  • trem2_sRNAseq Public archive

    analysis of scRNAseq for Trem2 paper

    ucsd-ccbb/trem2_sRNAseq's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 21, 2024
  • visJS2jupyter Public

    visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    ucsd-ccbb/visJS2jupyter's past year of commit activity
    Jupyter Notebook 78 MIT 16 7 2 Updated Aug 15, 2023
  • C-VIEW Public

    This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

    ucsd-ccbb/C-VIEW's past year of commit activity
    Python 11 MIT 2 22 0 Updated Aug 1, 2023
  • pAML_StemCell_Methods Public

    All computational code for execution of analyses described in Methods

    ucsd-ccbb/pAML_StemCell_Methods's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 24, 2023
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