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Pull requests: vgteam/vg
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Personalization features for non-autosomal chromosomes
#4992
opened Jul 31, 2026 by
eizengaj-roche
Contributor
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Make
vg augment warning about nameless paths into an error instead
#4991
opened Jul 31, 2026 by
faithokamoto
Contributor
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call: add opt-in read-level genotype likelihoods (--read-likelihood)
#4990
opened Jul 29, 2026 by
benedictpaten
Contributor
•
Draft
Better helptext and errors for
vg snarls
#4988
opened Jul 29, 2026 by
faithokamoto
Contributor
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vg surject: prune anchors in mapper-declared tail regions
#4986
opened Jul 29, 2026 by
Sagorikanag
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Force manpage to have all non-deprecated subcommands
#4979
opened Jul 25, 2026 by
faithokamoto
Contributor
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Promote secondary when primary alignment fails to surject
#4973
opened Jul 20, 2026 by
gaoj66-roche
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Allow long-read Giraffe to take self-loops/reversals between seeds
#4953
opened Jul 1, 2026 by
faithokamoto
Contributor
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Use vg WDL that gives RTG a defined memory limit
#4918
opened May 29, 2026 by
adamnovak
Member
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Add
--reference-bonus to bias surjection towards reference paths
#4786
opened Jan 5, 2026 by
JosephLalli
•
Draft
[WIP] add tag for allele number to call output
#4665
opened Jul 23, 2025 by
glennhickey
Contributor
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Keep haplotypes in
vg chunk that don't extend far enough
#4501
opened Jan 21, 2025 by
adamnovak
Member
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