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@flyconnectome Drosophila Connectomics group

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    40 repositories

    • aedes

      Public
      Programmatic access in R to in progress Aedes aegypti whole brain connectome
      R
      •1•3•1•1•Updated Sep 21, 2026Sep 21, 2026

    • natmcp

      Public
      MCP server giving coding agents authoritative, current, token-efficient access to natverse ground truth
      R
      •1•0•0•0•Updated Sep 17, 2026Sep 17, 2026

    • drosophila_neuropeptides

      Public
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Sep 15, 2026Sep 15, 2026

    • nat.python

      Public
      Library-agnostic Python interoperability for R (reticulate glue extracted from fafbseg)
      R
      •1•0•0•0•Updated Sep 13, 2026Sep 13, 2026

    • seatabler

      Public
      Generic R client for SeaTable servers
      rnatverseseatable
      rnatverseseatable
      R
      •0•1•0•0•Updated Aug 25, 2026Aug 25, 2026

    • fishr

      Public
      natverse access to in progress fish2 connectome dataset
      R
      •0•1•1•0•Updated Aug 23, 2026Aug 23, 2026

    • crantr

      Public
      R Client Access to Clonal Raider ANT (CRANT) Datasets
      R
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Aug 20, 2026Aug 20, 2026

    • cocoa

      Public
      Comparative Connectomics for Python
      clusteringneuronsneurobiology
      clusteringneuronsneurobiologyconnectomicscelltypes
      Python
      •
      GNU General Public License v3.0
      •2•10•1•0•Updated Aug 20, 2026Aug 20, 2026

    • 2025malecns

      Public
      Supplemental data for Berg et al. (2025)
      Jupyter Notebook
      •3•23•0•0•Updated Aug 7, 2026Aug 7, 2026

    • dvid_tools

      Public
      Python tools to query a DVID server
      Python
      •
      GNU General Public License v3.0
      •2•0•2•1•Updated Aug 5, 2026Aug 5, 2026

    • bigclust2

      Public
      Exploration and Analysis of Connectomics Data
      analysisclusteringtyping
      analysisclusteringtypingvisualisationneuronsconnectomics
      Python
      •
      GNU General Public License v3.0
      •0•4•1•0•Updated Jul 30, 2026Jul 30, 2026

    • acdc_py

      Public
      AC/DC matching algorithm implemented in Python
      Python
      •
      Other
      •0•0•0•0•Updated Jul 29, 2026Jul 29, 2026

    • flywire_annotations

      Public
      Annotations for the FlyWire dataset.
      Jupyter Notebook
      •12•75•0•0•Updated Jul 21, 2026Jul 21, 2026

    • transform_service

      Public
      Small web service to transform fly data
      Python
      •2•0•0•0•Updated Jul 20, 2026Jul 20, 2026

    • drosophila_neurotransmitters

      Public
      Neurotransmitter ground truth
      TeX
      •
      Creative Commons Attribution 4.0 International
      •2•8•4•0•Updated Jun 23, 2026Jun 23, 2026

    • coding-club

      Public
      File sharing for the tracers' R club
      Jupyter Notebook
      •2•6•0•0•Updated Jun 8, 2026Jun 8, 2026

    • yakuba

      Public
      Access the Yakuba FlyEM Dataset
      R
      •0•1•1•0•Updated Apr 22, 2026Apr 22, 2026

    • bigclust

      Public
      Tools to visualize and annotate big clusterings
      Python
      •
      GNU General Public License v3.0
      •2•5•1•0•Updated Apr 21, 2026Apr 21, 2026

    • imagereg_workshop

      Public
      Notebooks for the image registration workshop
      Jupyter Notebook
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • 2023neckconnective

      Public
      Analysis to support the Neck Connective paper combining FAFB, FANC and MANC neck connective neurons
      2•1•0•1•Updated Sep 5, 2025Sep 5, 2025

    • nblast-scoremats

      Public
      Collection of scoring matrices for NBLAST
      morphologysimilarityneuron
      morphologysimilarityneuronscoresnblast
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • 2024crant

      Public
      R
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • ol_annotations

      Public
      Annotations for Drosophila Optic Lobe neurons linking the FAFB-FlyWire and Male CNS Optic Lobe datasets
      R
      •0•3•0•0•Updated Feb 19, 2025Feb 19, 2025

    • fancr

      Public
      Support Acccess to the Female Adult Nerve Cord (FANC) Dataset
      rneurosciencedrosophila
      rneurosciencedrosophilaneuroanatomydrosophila-brainsnatverse
      R
      •
      GNU General Public License v3.0
      •2•2•1•1•Updated Sep 4, 2024Sep 4, 2024

    • hi-mc-examples

      Public
      Data & code for the HI-MC project
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 15, 2024Jun 15, 2024

    • hemibrain_olf_data

      Public
      Summary data on identified FIB hemibrain neurons including olfactory PNs
      R
      •
      MIT License
      •0•2•6•0•Updated Dec 21, 2022Dec 21, 2022

    • tools

      Public
      Overview of neuroscience tools developed in the Fly Connectomics group (University of Cambridge) and the Jefferis lab (MRC-LMB)
      pythonrtools
      pythonrtoolsneurosciencemorphometricsneuroanatomy
      1•6•0•0•Updated May 25, 2022May 25, 2022

    • 2020hemibrain_examples

      Public
      Code examples for Schlegel, Bates et al. (2020)
      GNU General Public License v3.0
      •4•5•0•0•Updated Nov 21, 2021Nov 21, 2021

    • ALPN_crossmatching

      Public
      Data and code snippets for cross-matching olfactory PNs between FAFB (left + right) and hemibrain
      Jupyter Notebook
      •0•1•1•0•Updated Mar 9, 2021Mar 9, 2021

    • hnf

      Public
      Documentation for the hierarchical neuron format
      dataskeletonstorage
      dataskeletonstorageannotationsmeshhdf5neuronsdotprops
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 15, 2021Feb 15, 2021
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