ensembl

🧬 gget enables efficient querying of genomic reference databases

genes and genomes at your fingertips

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

The Ensembl Compara Perl API and SQL schema

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

3D hotspot mutation proximity analysis tool

R package providing query functionality to BioMart instances like Ensembl

Efficient querying of biological databases

This is the ensembldb development repository.

A client for the Ensembl REST API written in the Python programming language

Scripts and procedures for detecting positively selected genes and codons in primates

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

Extract the Ensembl genes catalog to simple tables

Python tools for proteogenomics analysis toolkit

Utilities for downloading and managing protein FASTA files.

🧬 BioMCP — 生物信息学 MCP 服务器：PubMed/NCBI/BLAST/PDB/UniProt/富集分析，让任意 AI 助手直连生物数据库。Open-source bioinformatics MCP server.

The most awful genbank file you'll ever need to parse.

A collection of tools which Ensembl uses to work with Git

Makefile for reference annotations for genes & genomic regions

To automate data collection from ICGC database.