Protein 3D structure prediction pipeline
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
AIRFold Protein Structure Prediction System
De novo therapeutic peptide design pipeline using RFdiffusion and ESMFold to hallucinate NaV1.7 pain-channel blockers locally on CPU
Cost-aware protein folding inference — routes cache → AlphaFold DB → ESMFold. Never compute the same structure twice.
MutFold | Human breast cancer associated mutant protein structure prediction and alignment application
Unified Python library and CLI for protein structure prediction and inverse folding.
Lightweight AI drug virtual screening platform for biologic industry. Nearly 20 years of expertise in biopharma R&D, manufacturing, quality and regulatory affairs.
a lightweight cli wrapper around ESMFold2 for fast protein complex prediction from FASTA input.
Rooted, dual-method (ML + Bayesian) phylogeny of the bacterial Hfq family, with archaeal SmAP outgroup rooting and ESMFold/Foldseek structural verification
EpitopePred — An integrated immunoinformatics web server for automated multi-epitope vaccine engineering against viral, bacterial, protozoal, and fungal pathogens. Combines 30+ bioinformatics tools with deep learning (ESMFold, ESM-1b) and asynchronous pipeline orchestration.
Demonstration of ESMFold2 created by me. Hope is I deploy this in tandem with Neuroscience projects, particularly in understanding the contraindications of drugs on synapses.
ESM-Stream: Streamlit app for Protein Structure Prediction using ESMFold, powered by deep learning
ESMFold - Evolutionary-scale prediction of atomic-level protein structure with a language model
A protein sequence logo in 3D, wrapped around its own predicted structure. Amino acid letters stacked by how strongly a language model expects them, with no multiple sequence alignment anywhere.
This repository integrates ESM, EvolutionaryScale's protein language models, with the ExoStack platform to enable scalable AI-driven protein analysis, inference, and deployment.
Comparative structural analysis of the GREB1-like protein (Q9C091) using AlphaFold2, Phyre2, and ESMFold. Includes RMSD comparison, Ramachandran validation, ProQ2 quality assessment, and BLAST homolog analysis.
Protein sequence design loop on ESMC scoring + ESMFold structure prediction (Python + CLI).
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