lactic-acid-bacteria

Here are 3 public repositories matching this topic...

Qasim-Hussain-Code / moshpit_cocoa_fermentation_analysis

A reproducible, shotgun metagenomics pipeline (MEGAHIT, MetaBAT 2, Sourmash, Kraken 2) characterizing the microbial ecology, taxonomic abundance, and genomic bins of cocoa fermentation.

metagenomics microbiome microbial-ecology qiime2 saccharomyces-cerevisiae metabolic-profiling moshpit lactobacillaceae lactic-acid-bacteria microbial-succession food-microbiology fermentation-ecology theobroma-cacao cocoa-fermentation acetic-acid-bacteria acetobacteraceae mag-recovery

Updated Jun 4, 2026
Python

saranicolesousa / Project

Star

Simulation of lactic-acid bacteria (LAB) consortia in legume matrices, particularly chickpea and fava bean, in order to predict off-flavor mitigation.

microbial-consortia lactic-acid-bacteria plant-based-fermentation biological-modelling

Updated Jun 19, 2026
HTML

ephraimrv / probiotic-genome-analysis

Star

Reproducible figure pipeline for the draft genome of lactic acid bacterium isolate S1A: a circular genome map, a class II bacteriocin locus diagram, and predicted regulator families stratified by evidence tier. Genomic figure contribution to a study of LAB-loaded cellulose hydrogels. Predicted gene content, not measured activity.

ggplot2 bioinformatics transcription-factors genomics reproducible-research prokka genome-visualization probiotics bacterial-genomics bacteriocin lactic-acid-bacteria pycirclize

Updated Sep 25, 2026
Python

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