mixomics

This Github repo contains Jupyter notebooks for the publication " A Machine Learning Case-Control Classifier for SZ Based on DNA methylation in Blood

Improved plotting outputs for mixOmics models, using `ggplot2`

End-to-end, standards-first pipeline for EEG/iEEG × multi-omics biomarker discovery. Automates ingestion, robust EEG cleaning, rich derivatives, omics QC/batch correction, feature fusion, and model training with MLOps (configs, tracking, versioning). HPC-ready, reproducible, optionally privacy-preserving; supports local dev and clusters.

Reproducible multi-omics pipeline fusing metabolomics, biochemistry, and diet to classify colorectal cancer, with intermediate and late fusion and SHAP explainability.

This repository presents the files and methods used for statistical analyses of the faecal bacterial community profiles and SCFA data generated from calves raised on three different allowances of milk replacer.

COMPARISON OF MULTI-OMICS INTEGRATION METHODS

🧬 Workshop in omics integration and systems biology

Galaxy wrappers for the block.splsda, plotIndiv and plotVar functions from the mixOmics R package