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mofa
Here are 18 public repositories matching this topic...
factor models for omics data
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Sep 1, 2026 - Python
Work with trained factor models in Python
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Oct 22, 2024 - Jupyter Notebook
Beastmode: MofA (Mixture of Agents) orchestration framework for Hermes/OpenClaw/Codex with MemroOS-style context continuity.
multi-agent codex ai-agents cost-optimization mofa worktrees qwen context-management llm-orchestration mixture-of-agents agent-orchestration agent-memory claude-code agent-workflows context-rot openclaw hermes-agent self-improving-agents beastmode memroos
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Aug 13, 2026 - Python
A modular Nextflow pipeline for multi-omics integration, survival machine learning, and automated reporting.
machine-learning bioinformatics nextflow reproducible-science bioinformatics-pipeline survival-analysis bioinformatics-tool mofa multi-omics-integration
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Jun 13, 2026 - R
Differential Expression Analysis of protein, Gene set enrichment analysis, Multi-omic factor analysis, Pathway analysis, WGCNA
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Jul 29, 2024 - Jupyter Notebook
Nextflow pipeline integrating TCGA multi-omics with MOFA and downstream LASSO to reveal tissue-specific oncogene selection pressures
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Nov 14, 2025 - R
This project optimizes task allocation in Fog and Cloud Computing environments using multi-objective optimization techniques. It computes and analyzes Pareto fronts using MOCS and MOFA algorithms. The project includes Jupyter notebooks for data preparation, Pareto front calculation, and solution analysis.
python machine-learning cloud-computing multi-objective-optimization jupyter-notebooks fog-computing firefly-algorithm swarm-intelligence task-allocation mofa pareto-fronts mocs
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Mar 22, 2025 - Jupyter Notebook
Integrated host transcriptome (OSD-767) × microbiome (OSD-766) multi-omics analysis of ISS VEG-05 tomato: spaceflight dysbiosis and a microbe-driven host defense response.
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Aug 29, 2026 - R
High-performance multi-omics integration: VCF · RNA-seq · methylation · proteomics · scRNA-seq → HTML/JSON reports, real-time TUI. Written in Rust.
rust cli bioinformatics genomics conda vcf methylation proteomics mass-spectrometry transcriptomics single-cell differential-expression mzml umap rayon epigenomics multi-omics mofa
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Jul 4, 2026 - Rust
🔍 Explore multi-omics integration with DIABLO, DIVAS, and VAEs, providing clear methods for combining diverse data without implying causation.
python machine-learning rna-seq deep-learning integration neural-networks cancer-genomics survival-analysis chip-seq multi-modal factor-analysis variational-inference variational multi-task-learning bulk-rna-seq graph-neural-networks mofa single-cell-multiomics
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Sep 3, 2026 - Python
MOFA+ (Multi-Omics Factor Analysis) online tool
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Jan 21, 2025 - Python
Documentation analysis and manuscript figures
bioinformatics manuscript-figures single-cell-rna-seq multi-omics-data single-cell-analysis single-cell-omics mofa
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Jan 17, 2023 - R
Documentation analysis and manuscript figures of QuRIE-seq methods paper.
bioinformatics manuscript-figures multi-omics-data single-cell-analysis single-cell-omics mofa qurie-seq
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Oct 7, 2021 - R
Pediatric cancer somatic mutation landscape
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Aug 13, 2026 - R
Working through the Seurat(scRNA), MOFA(multi-omics integration), and MNIST(machine learning) tutorials
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May 22, 2023 - R
Personal bioinformatics cookbook of reusable R, Python and Quarto workflows for single-cell, transcriptomics, multi-omics and biomarker analysis.
python machine-learning bioinformatics rna-seq r reproducible-research computational-biology scrna-seq single-cell multi-omics quarto scatac-seq mofa multiome
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Aug 28, 2026 - Python
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