#

phylo-kmers

Here are 3 public repositories matching this topic...

phylo42 / PEWO

Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

workflow benchmarking snakemake metagenomics metabarcoding placement taxonomic-classification phylogenetic-placement phylo-kmers

Updated Jan 31, 2025
Python

phylo42 / sherpas

Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

virus recombination subtyping genotyping kmers ancestral-sequences phylo-kmers recombination-detection

Updated Sep 3, 2025
C++

phylo42 / RAPPAS

Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

metagenomics phylogenetics metabarcoding placement taxonomic-classification phylogenetic-placement kmers phylo-kmers genetic-markers

Updated Dec 20, 2023
Java

Add this topic to your repo

To associate your repository with the phylo-kmers topic, visit your repo's landing page and select "manage topics."