Ultrafast Sample Placement on Existing Trees
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Jun 1, 2026 - C++
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phylogenetic-placement
Here are 13 public repositories matching this topic...
A toolkit for analyzing and visualizing phylogenetic placement data
c-plus-plus phylogenetics genesis evolutionary-placement phylogenetic-data placement phylogenetic-placement gappa
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Apr 28, 2026 - C++
Wastewater-Based Epidemiology using Phylogenetic Placements
phylogenetics wepp phylogenetic-placement maximum-parsimony sars-cov-2 pathogen-surveillance wastewater-based-epidemiology visual-dashboard wastewater-based-surveillance
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Sep 7, 2026 - C++
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
workflow benchmarking snakemake metagenomics metabarcoding placement taxonomic-classification phylogenetic-placement phylo-kmers
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Jan 31, 2025 - Python
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
workflow pipeline nextflow evolution phylogenetics sequence-classification taxonomy-assignment phylogenetic-placement nf-core evolutionary-tree
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Sep 22, 2026 - Nextflow
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
hmm phylogenetics mixture-model dirichlet-process-mixtures taxonomy-assignment otu phylogenetic-placement jplace
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Sep 11, 2026 - C++
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
metagenomics phylogenetics metabarcoding placement taxonomic-classification phylogenetic-placement kmers phylo-kmers genetic-markers
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Dec 20, 2023 - Java
Improving the resolution of metagenomic analysis using WEPP
metagenomics phylogenetic-placement co-infection pathogen-surveillance public-health-surveillance metawepp haplotype-resolution point-of-care-diagnostics
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Sep 7, 2026 - Python
Pipeline for building topologically-constrained phylogenies from DNA barcode data
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Mar 13, 2025 - Python
Tool for estimating the difficulty of phylogenetic placements
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Jan 9, 2024 - Python
Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"
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Jun 9, 2023 - R
bioinformatics perl phylogenetics metabarcoding amplicon hmmer phylogenetic-placement taxonomic-assignment phyloassigner pplacer
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Dec 30, 2020 - Perl
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